6: In install.packages(pkgs = pkgs, lib = lib, repos = repos, . 安装R包报错的问题从一开始学生信就一直存在着，但是没有专门整理一下，前两天安装 CHIPseeker 的时候实在受不了了，因为碰见了好多坑，于是在这里专门整理一下，方便自己和他人查看. 今天想要安装tidyverse，但是遇到这个问题 install.packages("tidyverse", dependencies = TRUE ) Warning in install.packages : installation of package 'blob' had non-zero exit status 看来是这个blob包有问题， install.packages("blob") 得到了相同的报错 ERROR: failed to lock direct. 整个问题是出现在一周前，我在跟着《ggplot2：数据分析与图形艺术》这本书学习画图的时候，对于书中的"devtools"包我一直安装不上，当时出现了"安装程序包'devtools'时退出的状态不是0"这个错误，试了好几次 install . 显然,第一条错误消息是. Non zero exist error in R - ellienguyen.style But the console complaint was > slightly different from before: >> WARNING: ignoring environment value of R_HOME >> * Installing *source* package 'Hmisc' . I know that dplyr has made changes that are not backward compatible like the mutate_at function and I do not know how frequently these not . How to Install Packages in R Google Colab - Medium But there are times when we will find packages that are not available in CRAN, so we may need to install via Github. R is part of many Linux distributions, you should check with your Linux . Installing package(s) 'latticeExtra' installation path not writeable, unable to update packages: boot, class, cluster, codetools, foreign, KernSmooth, lattice, MASS, Matrix, mgcv, rpart Warning message: package 'latticeExtra' is not available (for R version 3.3.2) However, I was using DESeq2 before, don't understand what is happening . There is a binary version available but the source version is later: binary source needs_compilation Hmisc 4.3-1 4.4-0 TRUE Do you want to install from sources the package which needs compilation? 3: In install.packages (pkgs = doing, lib = lib, …) : installation of package 'XML' had non-zero . A Bioconductor mirror can be selected by setting . 6: In install.packages(pkgs = pkgs, lib = lib, repos = repos, . Copy link mathan4stat commented Oct 1, 2018. [R] Problem installing Hmisc (more info) When timeout is non-zero, the command is terminated after the given number of seconds. DOI: 10.18129/B9.bioc.DESeq2 Differential gene expression analysis based on the negative binomial distribution. CandiceChuDVM 40. Entering edit mode. ERROR . Error: .onLoad failed in loadNamespace() - Google Groups We can install the "utf8" package like this: R语言：关于"安装程序包****时退出的状态不是0"的解决方法01_荟儿爱喵喵的博客-csdn博客_安装程序包时退出状态的值不是0 Error in Hmisc installation for R 3.4.3 · Issue #82 - GitHub Installation of package had non-zero exit status - RStudio Community I was unable to load DESeq2 this morning. The more complicated solution is to install gfortran on your system (presumably a Mac) which I can't help you with, but google should be able to.